jiyue1214

Harmonisation pipeline is running slow

2

Based on the previous test, the harmonisation pipeline can finish 400 studies per day, however, when we ran the harmonisation pipeline using the spotbot account, 400 studies took more than...

Documentation for gwas-sumstat-tools

4

We need to create an online documentation/ tutorial about how to use gwas-sumstat-tools, so that both internal and external users can read and use gwas-sumstat-tools using CLI or UI. When...

Set pre-defined configure files

2

To make it more convenient for users who have generated their results using popular tools, we should provide pre-prepared configuration files that they can directly apply to their data. -...

Improve the UI based on curators' suggestion

1

Improve the UI design based on curators' feedback to https://ebispot.github.io/gwas-sumstat-format-was/

Allow user to generate configure and apply configure file on the UI side

3

- [ ] Create a new repository on the github to store UI/webassembly Files - [ ] Active the button of generating the configure file - [ ] Active the...

User story: As a user who wants to format my GWAS analysis output into a ready-to-submit format to the GWAS catalog, I want to click several buttons to get the...

Harmonisation pipeline did not use the right unmapped data to generate harmonisation log file

1

Yue followed Karatug's script to run the harmonisation pipeline on LSF and Slurm. She found the LSF pipeline used GCST90293086's unmapped file to generate GCST90293085's harmonisation log file. All other...