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Documentation for gwas-sumstat-tools

Open jiyue1214 opened this issue 10 months ago • 4 comments

We need to create an online documentation/ tutorial about how to use gwas-sumstat-tools, so that both internal and external users can read and use gwas-sumstat-tools using CLI or UI. When our formatted UI/webassembly mainly aim external users, this documentation is essential to guide how to edit the configure file to reformat their data. The documentation template is here: https://jiyue1214.github.io/gwas-sumstats-tools-Documentation/#/

  • [x] Create an template for gwas-sumstat-tools documentation (https://jiyue1214.github.io/gwas-sumstats-tools-Documentation/#/).
  • [ ] Editing the content for format CLI users
  • [ ] Editing the content for format UI users
  • [ ] Editing the content for read, validate and generate meta_data

When a user visits the documentation website, the user should find clear instructions on how to use the tools, including formatting and editing the configure file

jiyue1214 avatar Apr 11 '24 14:04 jiyue1214

@eks-ebi to think about where to display documentation on GWAS Catalog website

eks-ebi avatar Apr 17 '24 10:04 eks-ebi

Here is the initial draft, and I would appreciate any suggestions you may have to improve it.

jiyue1214 avatar Apr 23 '24 19:04 jiyue1214

@jiyue1214 The documentation looks really nice and very helpful! I've started writing up some feedback in this document - I haven't gone through everything yet, but I'll try to keep updating it over the next few days

eks-ebi avatar Apr 24 '24 14:04 eks-ebi

I have improved the documentation according to Elliot's suggestion.

jiyue1214 avatar May 14 '24 19:05 jiyue1214

I have migrated the documentation repo to EBISPOT: https://ebispot.github.io/gwas-sumstats-tools-documentation/#/

jiyue1214 avatar May 15 '24 10:05 jiyue1214

@eks-ebi add link to this documentation in the main GWAS Catalog submission documentation

eks-ebi avatar May 15 '24 10:05 eks-ebi

This ticket can be closed.

jiyue1214 avatar Jun 11 '24 20:06 jiyue1214