Harmonisation pipeline did not use the right unmapped data to generate harmonisation log file

[jiyue1214]

Yue followed Karatug's script to run the harmonisation pipeline on LSF and Slurm. She found the LSF pipeline used GCST90293086's unmapped file to generate GCST90293085's harmonisation log file. All other files are correct. Need to figure out the reason causing it.

[jiyue1214]

Where the script and intermediates files are: /nfs/production/keane/amp/AMP_harmonization/harmonization/test/Karatug_LSF_Slurm/LSF

[jiyue1214]

Generating harmonisation log is the last step of the whole pipeline, which inputs are two channel, harmonisation channel, and unmapped channel. harmonisation channel has id GCST, while unmapped channel perviously only contains path of unmapped file. I have improved the unmapped channel that to make sure it also checks the GCST_id while generating the log file.

This ticket can be moved to review channel and then close when Karatug finish testing the new release.

[jiyue1214]

Can be closed