goci icon indicating copy to clipboard operation
goci copied to clipboard

User friendly formatter

Open jiyue1214 opened this issue 4 months ago • 0 comments

User story: As a user who wants to format my GWAS analysis output into a ready-to-submit format to the GWAS catalog, I want to click several buttons to get the result downloaded and ready to submit.

User scenarios:

Occasional Users (external users) Occasional Users (external users) Frequent users (Internal users)
Number of publications needed to handle (number of configure files need to be generated) 1 1 >1
Number of files need to handle Single file (or less than 5 files) Batch files Batch files
Generate the configure file Web assembly (generate, edit and apply configure files) - 4GB limitation Web assembly Terminal (Need instruction)
Edit the configure file Web assembly Web assembly VScode / micro (Need instruction)
Apply the configure file to sumstats Web assembly Terminal (support local running, PBS, LSF,slurm)- needs a clear instruction Terminal (Need instruction)

To-do list:

  • Python code
  • [x] Integrate sum-stats-formatter into gwas-sumstats-tools (!)
  • [ ] Improve the speed of validation (maybe)
  • Webassembly
  • [x] A simple demo only contains the validation function from gwas-sumstats-tools
  • [x] Active the function of generating configure file in formatted
  • [x] Active the function of applying a configure to the input
  • [x] Allow the user to edit the configure in the text box and apply the configure file to the input file

jiyue1214 avatar Mar 05 '24 23:03 jiyue1214