James A. Fellows Yates
James A. Fellows Yates
TODO: - Veirfy the reordering of contigs is correct - Update output.md - Update/fix snapshots
Update: - My original tests were too simplistic, - ✅ I realised the `join` wasn't working properly because we can have one contig in multiple bins, so in the last...
TODO - Fixed the issues from before, and now can produce the reordered and a summary file, however I'm getting variable numbers of rows in the pydamage summary and number...
@nf-core-bot fix linting
I realise now I have made this overly complicated, I think I can basically have a single local module with a custom script that does the reordering (as we actually...
Latest status: nextflow code is mostly working, now trying to get the `summarise_pydamage.py` script working. Last time however I found there was some discreprencey, where there were a lot fo...
Note this may become redundant with `topic` channels, but I think this would be a nice small workaround for teh time being
Is there?! Ok maybe I tested on the wrong pipeline 😅 (mag has a huge number of warnings so maybe I missed it) Does it have the subworklow/module nuance though?
Because I guess in my case all my modules/subworklow did have version mixing calls - but they weren't getting to the end user
Updated accordingly