James A. Fellows Yates

Just to clarify the comments above from @mslarae13 , I think this PR is meant to be a CIG/TWG member quick reference document, whereas the MISIP is meant to be...

Two now identified problems: ## Major - [ ]Problem - Failed fields with validation does not block continuing with dialogue screens (i.e. pressing next) - Because validation has failed, the...

@mirpedrol I don't know if that sync is because you plan to continue on this branch or not, but it's probably easier to start from scratch 😅. Let me know...

> I was starting to work on this, yes! 😄 It was not very outdated since it's a mostly independent command so I think it is ok to continue working...

TODO: - [x] Fix output from fromSAmpleSheet to generate fastqs/bam branchs etc. - [x] Add check that required is at least R1 or BAM - [x] Do complete testing to...

For point two: https://nfcore.slack.com/archives/C056RQB10LU/p1690184737422429?thread_ts=1689589957.805559&cid=C056RQB10LU

For point 2, reallife example from @maxulysse : https://nfcore.slack.com/archives/C056RQB10LU/p1693815864368029?thread_ts=1693500027.216009&cid=C056RQB10LU ``` "anyOf": [ { "dependentRequired": ["fastq_1"] }, { "dependentRequired": ["bam"] } ], ``` https://github.com/nf-core/sarek/pull/1204 But still see caveat from Phil in...

My checklist: https://hackmd.io/@jfy133/B1L7b3ni6 The test TSV files: [nf-validation-samplesheets.zip](https://github.com/nf-core/eager/files/14310183/nf-validation-samplesheets.zip) Exmaple test command: `nextflow ../main.nf -profile apptainer,test --outdir ./results --input samplesheet-nf-validation.tsv --input nf-validation-samplesheets/02-samplesheet_v3_doublesinglestrandednotuniquesampleid.tsv`

🤠🤠🤠🤠🤠🤠 following in our Opa @apeltzer 's footsteps

@famosab Maxime is currently on holiday and moving jobs. If there are no other comments (as far as i can see), I think it's fine for you to commit your...