James A. Fellows Yates
James A. Fellows Yates
Hi @MikkelSchubert I decided to make a dedicated issue for general feedback of AdapterRemoval v3 testing, as I may find other points to discuss: **Version v3.0.0pre https://github.com/MikkelSchubert/adapterremoval/commit/344591c303da2b219f12c47f088c1fc573a84916** - ~~**Leaving in...
Currently, AdapterRemoval2 offers [many different output 'streams'](https://adapterremoval.readthedocs.io/en/latest/manpage.html#output-file-options) for each way a set of input files can be processed. In particular, quality trimmed vs non-quality trimmed get their own output flags....
To carry over from: https://github.com/ewels/MultiQC/issues/1005, just wanted to have this open to make the conversation 'cleaned up' in terms of requests. As stated on the PR, @MikkelSchubert had stated an...
This is a standalone module from BBMap, which partly uses in BBDuk, however BBDuk 'standalone' produces different stdout (log) files, thus the module. - [x] There is example tool output...
- [ ] This comment contains a description of changes (with reason) - [ ] `CHANGELOG.md` has been updated - [x] There is example tool output for tools in: https://github.com/ewels/MultiQC_TestData/pull/238...
Adds module for [Porechop](https://github.com/rrwick/Porechop) - [x] This comment contains a description of changes (with reason) - [x] `CHANGELOG.md` has been updated - [x] There is example tool output for tools...
### Description of feature It would be nice to somehow visuaise indicate 'groups' of modules within a MultiQC report. This would ideally be a 'title' of the section, and also...
### Description of feature It would make it easier on my eyes ;) As far as I can tell most colours should still be 'OK'(tm), it would mainly be flipping...
e.g. 63 of https://apeltzer.github.io/eager2-paper/ ``` 63. DamageProfiler: Fast damage pattern calculation for ancient DNA Judith Neukamm, Alexander Peltzer, Kay Nieselt Cold Spring Harbor Laboratory (2020-10-01) https://doi.org/ghd45j DOI: 10.1101/2020.10.01.322206 ``` This...
I just want post here that I recently added [nolearn to conda-forge](https://github.com/conda-forge/nolearn-feedstock). I made a fresh one after the attempt [here](https://github.com/conda-forge/staged-recipes/pull/2880), given the previous PR was so old. As on...