James A. Fellows Yates
James A. Fellows Yates
We are doing this replacement over time, so I think we can close this specific issue as updated Bowtie2 containers will be in in: https://github.com/nf-core/mag/pull/754/ Buit if it continues to...
#small-mound-i-feel-strongly-about-but-not-enough-to-fight-everyone
> The issue is more we still don't understand the objection. Since you're experienced, at least I feel like, there is something we're not understanding about your viewpoint. > >...
So presumably, first has second option here, and second module has the first flag ``` Pipeline options --only-error-correction Performs read error correction only. --only-assembler Runs assembly module only. ```
And I guess: `--continue` However the issue with splitting into to, is the official nf-core module presumably does not have an input channel supporting a pre-generated metaSPAdes folder
I spoke to Alex again. This only seems to be an issue with very large data, and the initial resource request is too low (causing the failure). Alex points out...
The tar question is the only outstanding thing from me now :)
Yes it was the same data I believe @sofstam can you confirm (and share)? Note the compositionality issue was detected with [taxpasta](https://taxpasta.readthedocs.io/), so there is also that to check, but...
@sofstam probably the `.command.sh`file in the work directory should suffice
Sorry on the delay of this @pirovc , I am meant to be tasked with updating the nf-core modules and make sure this is an error at that end, but...