James A. Fellows Yates
James A. Fellows Yates
Hi @winklerin I assign this to Maxime as he has the most knowledge of the aDNA workflow :)
Hi @Peter-Kille thanks for the report. Unfortunately we've been very aware of the very slow CONCOCT running time (and one of the authors - @alneberg has acknowledged this, with a...
Should b efixed here! https://github.com/nf-core/mag/pull/631
I'm trying this now
I can confirm the bug: ``` FATAL: container creation failed: mount hook function failure: mount /tmp/nxf.8z9dbXc8N3->/tmp/nxf.8z9dbXc8N3 error: while mounting /tmp/nxf.8z9dbXc8N3: destination /tmp/nxf.8z9dbXc8N3 doesn't exist in container ``` I wonder if...
To be honest we need to replace the local bowtie2 modules with the official nf-core module versions. We are getting there slowly, but MAG is a very complicated pipeline so...
To ocme back to this: is the 'best solution' to just update all the container versions?
OK, then maybe we can schedule in 2.6 a mass update of all containers? (And if required request the custom ones...)
Nice, I guess the next thing to do is to identify which local modules are pretty close to official nf-core ones, and also switch them out (and presumably wil have...