Joshua Charkow

> > It is also a bit unfortunate that we have 3 different fitting steps in the pipeline despite being the computationally most expensive step 🥲 I disabled 2 of...

> Hi all, is it possible to use UIS Scores for metabolomics? If so, how can it be done? Additionally, would it be possible to make the formulas on this...

> @jcharkow @cbielow maybe sage merges by precursor I did not enable MS2 scan summing. Maybe this is needed?  and if this can be used. What are reasonable settings...

> @jcharkow I think basic support for writing ion mobility out is there. If you have capacities, it would be great if you could look into how IM can be...

@timosachsenberg it looks like adding an IM extraction window to the extractChromatograms() and return_chromatogram() method should allow IM to be taken into account. https://github.com/OpenMS/OpenMS/blob/c112411600c4a623d7a01f15c206ff827ba44401/src/openms/source/TRANSFORMATIONS/FEATUREFINDER/FeatureFinderIdentificationAlgorithm.cpp#L562-L566 Adding IM as a parameter to...

For bruker I typically use 0.06 but I have tolerance due to possible calibration erros. If you have the IM value of the feature, you might be able to get...

Closed in favour of https://github.com/PyProphet/pyprophet/pull/126

This is completed in previous major refactoring

Yes I think we still want it in the GUI however it is not a major priority

I don't mind the config its just don't really like how some parameters are not relevant for certain plots. Maybe the plot config should be directly parameters of the respective...