Joshua Charkow

## Description 1. [FIX] ion mobility calibration errors with PASEF files (overlapping m/z windows distinct by their ion mobility) 2. [FEATURE] add outputs on measured ion mobility on MS1 and...

Patch/extend osw output

4

## Description Extend output in .osw file to include metrics on peak shape on the transition level. Addressing issue https://github.com/OpenMS/OpenMS/issues/7222 ## Checklist - [X ] Make sure that you are...

OpenSwath uis score testing

16

To my knowledge there currently is no OpenSwath black box tests that include UIS scoring. Would be great if we could have a test for this.

Parquet Export

1

### Issue Some data scientists are not as familiar/comfortable with examining files in SQLite based formats however require more information than what is output from the export tsv (e.g. OpenSwathScores)...

Problem: Currently XGBoost model does not store feature names, just stored as f1...fn. Solution:Before exporting the model add the feature names.

Currently, Interactive1DPlotter allows for chromatograms to display peak boundaries. Also allow this functionality in mobilograms

Test/gui tests

1

# Description --DRAFT-- Addition of basic GUI tests. Currently just have tests which ensure that the example files load properly (no errors) . Meant to be run with pyttest. #...

Plot Interface Refactoring

3

Refactor plotting documentation for easier interaction with python interface/jupyter notebook interface. I am not too sure which strategy would be best. Some ideas: Remove the `config` interface and directly take...

Streamlit Caching sometimes too good

1

**Describe the bug** When update extraction parameters sometimes plot does not update

Spectra seem to have overlapping signals

2

**Screenshots**