Jake Pennington

Results 309 comments of Jake Pennington

Please attach `kilosort4.log` from the results directory.

This was a bug introduced in a recent version, related to using the `data_dir` setting. It's fixed in the latest release. Updating with `pip install --upgrade kilosort` should resolve it....

That sounds like it's either not being run in the correct environment, or something about the package management got messed up. I would recommend double checking whatever script/interface you're using...

Are you sure there aren't any other channels in the data that aren't included in the 128 you highlighted, like ground channels that aren't included in that number? I can't...

It's hard to say much from this, other than it looks like you have two pretty clearly separated groups of units: ones with higher spike counts and low amplitude, and...

Some variables will likely be written this way in the future, but we do not plan to write every variable in this way. If you would like help debugging the...

This looks like an issue with your python environment or your display variable. It is not a KS4 issue. I would suggesting starting with the link provided in the error...

The recording looks pretty unstable, especially after the first ~3000s. The data after that point is not likely to be sorted reliably. I would recommend you try sorting just the...

Correct, KS4 is reported huge drift in the latter portion of the recording. I am not claiming that there is in fact that much drift in the recording. The issue...

24 GB of video RAM should be sufficient. System RAM mainly depends on spike count. 64GB should be enough for a 3-4 hour recording even with the high channel count,...