Jake Pennington

Jacob/amplitudes

1

Updated variables exported to phy: 1) templates are normalized (but not unwhitened) before saving. 2) templates are unwhitened when computing cluster amplitudes. 3) actual whitening matrix inverse is saved.

### Feature you'd like to see: Add more in-line comments to source-code, especially in spikedetect.py, template_matching.py, and clustering_qr.py, to make debugging easier. ### Additional Context _No response_

### Describe the issue: NumPy version >= 2.0.0 breaks compatibility with some of our third-party dependencies. Our next update to pip will change our setup requirements to `NumPy >=1.20.0,

### Describe the issue: Switching to using a pyproject.toml file for installation has been the recommendation for at least a few years now, and starting with pip >= 25.0 (expected...