bids-validator

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[ENH] add support for qMRI json in top dir

1

relates to #1438

Remi-Gau

Schema/expression language

2

- Introduces functions for schema expression language outlined [here](https://github.com/bids-standard/bids-specification/tree/master/src/schema#Expressions). - ~~Adds nifti header loading but should revised. Causes a considerable slow down from loading whole nifti files synchronously.~~ - Adds...

rwblair

PHENOTYPE_SUBJECTS_MISSING issue

2

Hello, I've run into what might be an edge case. I have one participant with missing imaging data but questionnaires filled in. This participant is thus present in the phenotype...

JonteP

participants.tsv participant_id not checked closely enough

2

[ds001971 participants.tsv](https://openneuro.org/datasets/ds001971/versions/1.1.1) has two problems: ``` participant_id participant_id sex age handedness sub-001 CQ2 F 18-38 R sub-002 BT4 F 28 R ... ``` First is that there are two `participant_id`...

larsoner

Support for globbing patterns for stim_file in events.tsv

5

## Context - this concerns a dataset containing data and stimuli - stimuli are movies where each is stored as a .wav file + a series images (one per movie...

Remi-Gau

Add validator check for hidden directories

1

As per Franklin Feingold: this would be extending the validator to raise an `error` for hidden directories in the data structure related: https://github.com/bids-standard/bids-validator/issues/627 **NOTE:** moved this ticket from the OpenNeuro...

ckrountree

Ignore files in _scans.tsv that correspond to entries in .bidsignore (#1366)

12

PR for handling #1366 Makes use of session storage to save the contents of .bidsignore when it is read originally. This is retrieved later while evaluating _scans.tsv files for ignoring...

appukuttan-shailesh

Bump hed-validator dependency to v3.13.4

1

See the release notes at https://github.com/hed-standard/hed-javascript/releases/tag/v3.13.4. The main feature in this release is validating TSV files in a way that respects their `onset` column (merging rows with the same onset...

happy5214

3D DWI files produce are not marked as invalid, but fail VOLUME_COUNT_MISMATCH

8

Creating a fake DWI volume with shape `(5, 5, 5, 1)`, bval of `0` and bvec of `0\n0\n0\n` is valid. If I change the shape to `(5, 5, 5)`, then...

effigies

EEG: multiple dataset files can be submitted with different extension

7

This dataset contains both .set and .vhdr files https://nemar.org/dataexplorer/detail?dataset_id=ds003190 This should not be possible. There should be either one or the other.

arnodelorme