bids-validator

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PHENOTYPE_SUBJECTS_MISSING issue

6

Hello, I've run into what might be an edge case. I have one participant with missing imaging data but questionnaires filled in. This participant is thus present in the phenotype...

JonteP

Provide install documentation for Deno for environments using older releases of glibc

1

A user reported Deno doesn't run on glibc 2.18 (released in 2013). We should point at instructions for a workaround (possibly Conda?).

nellh

AcquisitionDuration - misunderstanding?

1

Dear experts, We are using the latest bids-validator and have to deal with this error: The fields 'RepetitionTime' and 'AcquisitionDuration' for this file are mutually exclusive. To specify acquisition duration,...

karl-koschutnig

Create leading directories to the log file

2

``` (deno) yoh@typhon:/mnt/DATA/data/yoh/1076_spacetop$ duct deno run --allow-read --allow-env --reload -A https://github.com/bids-standard/bids-validator/raw/deno-build/bids-validator.js --outfile logs/deno-bids-validator.log $PWD 2025-01-28T16:13:33-0500 [INFO ] con-duct: duct is executing 'deno run --allow-read --allow-env --reload -A https://github.com/bids-standard/bids-validator/raw/deno-build/bids-validator.js --outfile logs/deno-bids-validator.log...

yarikoptic

Add FAQ section in the documentation

1

Some questions keep coming back: having a FAQ could help answering them faster in the future possible entries - are my data uploaded anywhere when I use the validator in...

Remi-Gau

Change schema issues

6

It seems with the new validator some of the defined issue codes have changed. We previously used [this](https://github.com/bids-standard/bids-validator/blob/main/src/issues/list.ts) list to find the issue codes, but it seems some of them...

monique2208

Docker hub - new version

1

Hi ! Is there a plan to push a new docker container with the new version of bids-validator ? The latest version available is V1.15.0. Thank you in advance Arnaud

arnaudbore

Change in validator

2

This dataset used to pass the validator and it no longer does https://openneuro.org/datasets/ds004350/versions/1.1.1 It no longer does and this is the attached error from https://bids-standard.github.io/bids-validator/ The error does not make...

arnodelorme

Relates in a spirit of improving integration between PRs to bids examples, validator and specification itself: - https://github.com/bids-standard/bids-validator/issues/38 with a relatively simple use-case of e.g. - https://github.com/bids-standard/bids-specification/pull/1981 where we need...

yarikoptic

is it possible to "plugin" additional local checks?

2

dcm2niix adds field `ConversionSoftwareVersion` into sidecar .json, which is great since it allows to verify that all data files were converted using the same version, which could be "career saving"...

yarikoptic