bids-validator

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Support for parquet format and/or dataframe access

2

Related to https://github.com/bids-standard/bids-specification/issues/1792, which is on my mind again because of https://hbcd-docs.readthedocs.io/data_access/dataformats/tabulated/: > [🔗](https://hbcd-docs.readthedocs.io/data_access/dataformats/tabulated/#parquet) **Note: Parquet Not Currently Supported by BIDS ▸** > > Please note that Parquet files are...

effigies

Since the goal of the `--json` option is to make the validation results machine readable, it seems to me that the validator can benefit from having a JSON schema published...

candleindark

UTF-16 participants.tsv file crashes the validator instead of raising an issue

1

I haven't checked whether it's special to that file, any UTF-16 TSV file, or any UTF-16 file. This should be an error, not a crash.

effigies

Using the [web interface](https://bids-standard.github.io/bids-validator/) of validator to validate a local clone of https://github.com/OpenNeuroDatasets/ds002912, a bunch of errors were detected. However, when the "Save JSON log" link was clicked to save...

candleindark

Interaction of BIDS and HED for errors

13

@effigies @rwblair @happy5214 We are close to releasing a major version change 3.15.0 --> 4.0.0 of the hed-validator. The new validator is streamlined in that much of the legacy code...

VisLab

Documentation

11

The README and API docs are not really sufficient. We should add proper documentation. * User docs * Using the web UI * Using the CLI * Installation * Execution...

effigies

Support validation of git-annex content available in an S3 remote

1

For OpenNeuro to host datasets with remote annexed content, we should support a validation mode that can access (or skip) that remote content as needed.

nellh

https://openneuro.org/datasets/ds004584/versions/1.0.0/file-display/task-Rest_events.json contains `[]`. The validator should check that JSON files actually are objects and not other JSON-parseable structures.

effigies

In --json output, include "hed string" and point to multiple rows when applicable to HED error

2

I am not sure if - #157 covers this since I find no "hed string" which I observe in txt output downloaded from running HED validation on https://hedtools.org/hed/events ``` Issues...

yarikoptic

validator outputs

2

possible outputs features - [ ] txt file out with validation status (useful to submit data papers) - [ ] % of RECOMMENDED keys passed (0% = minimally compliant --...

CPernet