scde

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Dear scde team, Thank you for this great scde package! When I read the tutorials [Single-Cell Differential Expression Analysis](http://hms-dbmi.github.io/scde/diffexp.html), I noticed that it is said ***The analysis starts with a...

DamienTan

Hello, I have checked all the issues raised and resolved related to my current problem, but nothing is working. I even installed new R and then tried whatever steps suggested...

ps120195

Error in checkSlotAssignment(object, name, value)

2

Error in checkSlotAssignment(object, name, value) : assignment of an object of class “expression” is not valid for slot ‘defineComponent’ in an object of class “FLXMRglmC”; is(value, "expressionOrfunction") is not TRUE...

mirauta

Hi, I'm getting an error while running : > o.ifm

jingjiai

scde issue

3

I keep getting this error when trying to run scde.error.models() or knn on the data from the scde tutorial. **Error in checkSlotAssignment(object, name, value) : assignment of an object of...

mark0237

last biocoductor version

4

I am not able to reproduce the tutorial example with last scde version from bioconductor. About one week ago it was working fine. ``` # load example dataset data(es.mef.small) #...

dibbelab

Hello, and sorry for asking this here, i saw that in you paper you used ES/MEF cell dataset published by Islam et al. I want to use this dataset to...

dalibor49

Hi, I'm getting an error while running scde.expression.difference and I don't know how to solve it: > ediff.batch

marctormo

Hi, I am using SCDE to make differentce expression analysis. I got the problem that how to get the baseMeanA and baseMeanB in result of scde.expression.difference(), or other functiones in...

lyqbiocc

Error in FUN(X[[i]], ...)

17

run command line: scde.error.models(counts = cd, groups = sg, n.cores = 1, threshold.segmentation = TRUE, save.crossfit.plots = FALSE, save.model.plots = FALSE, verbose = 1) error info: Error in FUN(X[[i]], ...)...

xuesongjing