Error in checkSlotAssignment(object, name, value)

[mirauta]

Error in checkSlotAssignment(object, name, value) : assignment of an object of class “expression” is not valid for slot ‘defineComponent’ in an object of class “FLXMRglmC”; is(value, "expressionOrfunction") is not TRUE

This error was raised before (#44) but none of the suggested solutions work.

output of session Info is:

library(scde) sessionInfo() R version 3.5.1 (2018-07-02) Platform: x86_64-apple-darwin15.6.0 (64-bit) Running under: macOS Sierra 10.12.5

Matrix products: default BLAS: /System/Library/Frameworks/Accelerate.framework/Versions/A/Frameworks/vecLib.framework/Versions/A/libBLAS.dylib LAPACK: /Library/Frameworks/R.framework/Versions/3.5/Resources/lib/libRlapack.dylib

locale: [1] en_GB.UTF-8/en_GB.UTF-8/en_GB.UTF-8/C/en_GB.UTF-8/en_GB.UTF-8

attached base packages: [1] stats graphics grDevices utils datasets methods base

other attached packages: [1] edgeR_3.22.5 limma_3.36.5 scde_2.8.0 flexmix_2.3-13 lattice_0.20-35 BiocInstaller_1.30.0

loaded via a namespace (and not attached): [1] modeltools_0.2-22 locfit_1.5-9.1 Rook_1.1-1 splines_3.5.1 haven_1.1.2 carData_3.0-2
[7] stats4_3.5.1 mgcv_1.8-25 rlang_0.3.0.1 pillar_1.3.0 foreign_0.8-71 BiocParallel_1.14.2
[13] BiocGenerics_0.26.0 RColorBrewer_1.1-2 readxl_1.1.0 MatrixModels_0.4-1 extRemes_2.0-9 pcaMethods_1.72.0
[19] cellranger_1.1.0 zip_1.0.0 Biobase_2.40.0 rio_0.5.10 RcppArmadillo_0.9.100.5.0 forcats_0.3.0
[25] SparseM_1.77 Cairo_1.5-9 quantreg_5.36 parallel_3.5.1 curl_3.2 RMTstat_0.3
[31] Rcpp_0.12.19 abind_1.4-5 brew_1.0-6 rjson_0.2.20 hms_0.4.2 openxlsx_4.1.0
[37] distillery_1.0-4 grid_3.5.1 Lmoments_1.2-3 tools_3.5.1 magrittr_1.5 tibble_1.4.2
[43] crayon_1.3.4 car_3.0-2 pkgconfig_2.0.2 MASS_7.3-51 Matrix_1.2-14 data.table_1.11.8
[49] rstudioapi_0.8 nnet_7.3-12 nlme_3.1-137 compiler_3.5.1

[idalind]

Did anybody figure out a solution to this issue? I would really like to try scde, but cannot because of this very same issue.

[GouQiao]

Error in checkSlotAssignment(object, name, value) : assignment of an object of class “expression” is not valid for slot ‘defineComponent’ in an object of class “FLXMRglmC”; is(value, "expressionOrfunction") is not TRUE

This error was raised before (#44) but none of the suggested solutions work.

output of session Info is:

library(scde) sessionInfo() R version 3.5.1 (2018-07-02) Platform: x86_64-apple-darwin15.6.0 (64-bit) Running under: macOS Sierra 10.12.5

Matrix products: default BLAS: /System/Library/Frameworks/Accelerate.framework/Versions/A/Frameworks/vecLib.framework/Versions/A/libBLAS.dylib LAPACK: /Library/Frameworks/R.framework/Versions/3.5/Resources/lib/libRlapack.dylib

locale: [1] en_GB.UTF-8/en_GB.UTF-8/en_GB.UTF-8/C/en_GB.UTF-8/en_GB.UTF-8

attached base packages: [1] stats graphics grDevices utils datasets methods base

other attached packages: [1] edgeR_3.22.5 limma_3.36.5 scde_2.8.0 flexmix_2.3-13 lattice_0.20-35 BiocInstaller_1.30.0

loaded via a namespace (and not attached): [1] modeltools_0.2-22 locfit_1.5-9.1 Rook_1.1-1 splines_3.5.1 haven_1.1.2 carData_3.0-2 [7] stats4_3.5.1 mgcv_1.8-25 rlang_0.3.0.1 pillar_1.3.0 foreign_0.8-71 BiocParallel_1.14.2 [13] BiocGenerics_0.26.0 RColorBrewer_1.1-2 readxl_1.1.0 MatrixModels_0.4-1 extRemes_2.0-9 pcaMethods_1.72.0 [19] cellranger_1.1.0 zip_1.0.0 Biobase_2.40.0 rio_0.5.10 RcppArmadillo_0.9.100.5.0 forcats_0.3.0 [25] SparseM_1.77 Cairo_1.5-9 quantreg_5.36 parallel_3.5.1 curl_3.2 RMTstat_0.3 [31] Rcpp_0.12.19 abind_1.4-5 brew_1.0-6 rjson_0.2.20 hms_0.4.2 openxlsx_4.1.0 [37] distillery_1.0-4 grid_3.5.1 Lmoments_1.2-3 tools_3.5.1 magrittr_1.5 tibble_1.4.2 [43] crayon_1.3.4 car_3.0-2 pkgconfig_2.0.2 MASS_7.3-51 Matrix_1.2-14 data.table_1.11.8 [49] rstudioapi_0.8 nnet_7.3-12 nlme_3.1-137 compiler_3.5.1

I met same issue, did you figure out?