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Cloud-native genomic dataframes and batch computing
### What happened? This is a follow up issue to a comment in the job groups PR #14282. The queries for the scheduler and canceller both pull the job groups...
### What happened? I've been waiting to delete temporary files used for swapping the VEP reference files to ones that are indexed. These shouldn't be needed any longer. I wanted...
### What happened? ``` ____________ test_submit_new_job_groups_after_a_group_was_cancelled ____________ client = def test_submit_new_job_groups_after_a_group_was_cancelled(client: BatchClient): b = create_batch(client) g1 = b.create_job_group() g1.create_job(DOCKER_ROOT_IMAGE, ['true']) b.submit() g1.cancel() g2 = b.create_job_group() g2.create_job(DOCKER_ROOT_IMAGE, ['true']) > b.submit() io/test/test_batch.py:1989:...
### What happened? [SAIGE](https://github.com/weizhouUMICH/SAIGE) and its competitor [REGENIE](https://rgcgithub.github.io/regenie/) are the standard bearers for modern GWAS. Hail should expose SAIGE within the Hail Query language. The interface should roughly match `hl.linear_regression_rows`....
### What happened? https://hail.zulipchat.com/#narrow/stream/127634-Feature-Requests/topic/Adding.20to.20Hail.20annotation.20database/near/397575602 We need a Hail team member to write up how to contribute to the annotation database and then help them do that. Patrick Cummings was the...
### What happened? Currently, in order to change the rate limit in `internal-gateway`, one has to manually edit `envoy.py` and redeploy CI. This is non-standard, time intensive and can be...
### What happened? Most stored procedures take either a shared or exclusive lock on a relevant row of the `jobs` table near the start of the procedure, but not all....
If a user writes a map over a local array or stream value, which they know is large, they should be able to force scratch memory to be cleared after...
### What happened? The `hailtop.batch` client uploads a script file when the command becomes too large. This functionality frees users from thinking about the size of their commands. It's a...