gouwei1

Something went wrong with detection of A5 and A3

6

After adding -b V to command: suppa.py generateEvents, the detection of A5 went wrong as the figure shown in IGV using *_A5_variable_10.gtf. There should not be a A5, and also...

Does ortholog equal to orthologue ?

Hi David, I found there are some genes that were paralogs only detected in one species in the file of Phylogenetic_Hierarchical_Orthogroups/N0.tsv. Can this kind of genes be referred as species-specific...

Hi, I followed the tutorial of Rooting phylogenetic trees (http://www.iqtree.org/doc/Rootstrap#inferring-unrooted-tree-with-outgroup) with the same data and code: iqtree2 -s bovidae_outgroup.phy -p bovidae.nex -B 1000 -T AUTO -st NT2AA --prefix rev_aa_outg While...

The following error messages appear after I ran deSALT aln: [Main] deSALT - De Bruijn graph-based Spliced Aligner for Long Transcriptome reads [Param-INFO] deSALT parameters:index-kmer:22 seed-lmer:15 hash-kmer:8 thread:2 strand_diff:20 identify...

I have annotated my transcripts (from non model species) with GO and KEGG numbers. How to import this information into R and analysis using GWENA?