gouwei1

Detection of A3 also went wrong: 

The four transcripts above were from input GTF for splicing event detection, and below are results file *_A5_variable_10.gtf. I think there should not be a A5 or A3 (the second...

Yes, the detections of A3 or A5 seem wrong. But if I remove -b V, they can not be detected. The input and output files were sent to your e-mail...