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Why there's no support value after re-rooting ?

Open gouwei1 opened this issue 1 year ago • 0 comments

Hi,

I followed the tutorial of Rooting phylogenetic trees (http://www.iqtree.org/doc/Rootstrap#inferring-unrooted-tree-with-outgroup) with the same data and code: iqtree2 -s bovidae_outgroup.phy -p bovidae.nex -B 1000 -T AUTO -st NT2AA --prefix rev_aa_outg

While after re-rooting the tree on the outgroup (Wild_pig and Minke_whale), there is no support value between Yak and Cow. Why? Also, I noticed that there's also no support value if there are more than 2 identical sequences. How to denote that in the phylogenetic tree display? How to distinguish the two kinds of blank in the figure annotation?

Yours, Wei

gouwei1 avatar Jun 25 '23 13:06 gouwei1