deSALT
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Segmentation fault
The following error messages appear after I ran deSALT aln:
[Main] deSALT - De Bruijn graph-based Spliced Aligner for Long Transcriptome reads [Param-INFO] deSALT parameters:index-kmer:22 seed-lmer:15 hash-kmer:8 thread:2 strand_diff:20 identify junction:both_strand [Phase-INFO] Loading Index and Reads [Phase-INFO] Seeding and Chaining Phase (first-pass) [Skeleton-generation] Generating skeletons of 99485 reads, total 241286245 bases in 62.112282 seconds [Phase-INFO] Total 99485 reads were processed in 62.352 seconds (first-pass) [Phase-INFO] Refined Alignment Phase (second-pass) [Phase-INFO] Exons inference by skeletons of all reads [Phase-INFO] Inferring total 84570 isolated regions (pseudo-exons) after merging and filtering [Phase-INFO] Refining pseudo-exons by scoring matrix [Loop-ProcessReads] The 0st loop of refined alignment procedure with 49744 reads...... [Loop-ProcessReads] Aligned 49686 reads to genome, and confirmed total 25182 exons' strand in 426.394483 seconds [Loop-ProcessReads] The 1st loop of refined alignment procedure with 49741 reads...... /opt/tsce4/torque6/share/cu17/mom_priv/jobs/59771.mu01.SC: line 13: 25119 Segmentation fault (core dumped) deSALT aln -t 20 -o aln.sam -f ./temp1 ./index long_reads.fa
How can I solve this? Thank you!