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geneontology
Graph-based modeling environment for biology, including prototype editor and services
Once we have implemented more robust user/group/funding information, we'd like to explore a model locking mechanism--there is some discomfort with the idea that "anybody could edit my model". Personally, I'd...
Hi, This is a wish-list item, but the overall goal is to make use of additional curated data outside of GO for adding contextual information to a model. WB generates...
On the annotation call yesterday we discussed the Flybase paper that we felt would be a good example for creating 'regulation of x' annotations derived from a LEGO model. The...
Over time, the original gulp build pipeline for noctua apps has accumulated a lot of cruft and special cases. We need to revisit the build pipeline, simplifying where we can...
Add a tab in the lower panel that shows the inferred located-in, contributes-to, involved-in relationships for each gene/product. The reasoner does the majority of the work here. Minerva will query:...
On the 2016-02-01 LEGO call, we discussed the different types of comments that people may wish to add to an individual, e.g. curatorial comments, supporting evidence sentences from a paper,...
Hi, This topic came up in the discussion with @hdietze and @ukemi today when talking about the GAF outputs. Would it be possible to include the inferred BP annotations in...
Examples: - functions that lack occurs_in or enabled_by - Assertions that lack evidence - Models that lack processes - Models with ClassAssertions to a deprecated class (#279) Not sure if...
Proposal for how this would work. ## Template/Prototype models - Each template would live in its own model - The model will be like any other model, but will include...
From @ValWood Scenario: user has created a model and not added any evidence, or evidence is incomplete. Example: a cloned model from another species with orthologs switched or a quickly...
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Graph-based modeling environment for biology, including prototype editor and services