pathways topic

pathpy is an OpenSource python package for the modeling and analysis of pathways and temporal networks using higher-order and multi-order graphical models

IngoScholtes

Caleydo - Visualization for Molecular Biology

Caleydo

MSigDB gene sets for multiple organisms in a tidy data format

igordot

R client for the OmniPath web service

saezlab

GeneSCF moved to a dedicated GitHub page, https://github.com/genescf/GeneSCF

decodebiology

PHOsphoproteomic dissecTiOn using Networks

jdrudolph

Pathfinder is a tool for the visual exploration of paths in large graphs.

Caleydo

Graph-based modeling environment for biology, including prototype editor and services

geneontology

A web application to visualize and edit the pathway models represented by SBGN Process Description Notation

iVis-at-Bilkent

A web application to visualize and edit pathway models

iVis-at-Bilkent