noctua

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Add annotation / model dispute functionality

9

At yesterday's UCL-EBI meeting @tonysawfordebi suggested that a 'Dispute Annotation/Model...' functionality could be implemented in the Noctua tool for QC purposes and to improve the consistency of annotations. @vanaukenk suggested...

BarbaraCzub

Queries to assess use of MF-to-BP relations in Noctua models

18

We are working on annotation documentation for MF-to-BP relations and would like to assess the extent to which relations, other than 'part of', have been used to link MFs to...

vanaukenk

Queries to assess use of BP-to-BP relations in Noctua models

2

We are working on annotation documentation for BP-to-BP relations and would like to assess the extent to which relations, other than 'part of', have been used to link BPs to...

vanaukenk

EMBL identifiers in MGI models

10

I noticed that a bunch of the MGI models have some identifiers like this: `http://www.ebi.ac.uk/cgi-bin/emblfetch?style=html&Submit=Go&id=AK035432` this one comes from http://noctua.geneontology.org/editor/graph/gomodel:MGI_MGI_1920249 We have a prefix `EMBL` for this namespace in our...

balhoff

Upgrade system to 10.x series LTS for Node.js

3

Closing this ticket would involve upgrading our target platform to the latest Node.js LTS. Most basically, this means running all compilations and tests for 10.x LTS on our current 18.04...

kltm

Although it is standard practice for curators to check their models with the reasoner before making them production. Sometimes people forget. If a model is opened in the graph editor,...

ukemi

Bumps [json5](https://github.com/json5/json5) from 1.0.1 to 1.0.2. Release notes Sourced from json5's releases. v1.0.2 Fix: Properties with the name __proto__ are added to objects and arrays. (#199) This also fixes a...

dependabot[bot]

Bumps [json5](https://github.com/json5/json5) and [rc-config-loader](https://github.com/azu/rc-config-loader). These dependencies needed to be updated together. Updates `json5` from 1.0.1 to 2.2.3 Release notes Sourced from json5's releases. v2.2.3 Fix: [email protected] is now the 'latest'...

dependabot[bot]

Bumps [express](https://github.com/expressjs/express) from 4.14.0 to 4.17.3. Release notes Sourced from express's releases. 4.17.3 deps: accepts@~1.3.8 deps: mime-types@~2.1.34 deps: [email protected] deps: [email protected] deps: [email protected] deps: [email protected] deps: [email protected] deps: [email protected] deps:...

dependabot[bot]

Bumps [decode-uri-component](https://github.com/SamVerschueren/decode-uri-component) from 0.2.0 to 0.2.2. Release notes Sourced from decode-uri-component's releases. v0.2.2 Prevent overwriting previously decoded tokens 980e0bf https://github.com/SamVerschueren/decode-uri-component/compare/v0.2.1...v0.2.2 v0.2.1 Switch to GitHub workflows 76abc93 Fix issue where decode...

dependabot[bot]