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Graph-based modeling environment for biology, including prototype editor and services

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Bumps [minimatch](https://github.com/isaacs/minimatch) to 3.0.4 and updates ancestor dependencies [minimatch](https://github.com/isaacs/minimatch), [yamljs](https://github.com/jeremyfa/yaml.js) and [gulp](https://github.com/gulpjs/gulp). These dependencies need to be updated together. Updates `minimatch` from 0.2.14 to 3.0.4 Commits e46989a v3.0.4 ddfacbd update...

dependencies

Newbie here. I followed an older discussion here: https://github.com/geneontology/noctua/issues/471 that suggests that adding data about at least some UniProt IDs should be possible. However, I tried retrieving this entry using...

bug (A: showstopper)

Bumps [bootstrap](https://github.com/twbs/bootstrap) from 3.3.6 to 3.4.1. Release notes Sourced from bootstrap's releases. v3.4.1 Security: Fixed an XSS vulnerability (CVE-2019-8331) in our tooltip and popover plugins by implementing a new HTML...

dependencies

SGD's 5fadbcf000000262 keeps popping back as production even though we're trying to delete it, so a very similar issue to https://github.com/geneontology/noctua/issues/485. As part of annotation review, we deleted an annotation...

bug (B: affects usability)

In some cases, when searching for identifiers in GO-CAMs on Google, toaster is revealed as a secondary hit, rather than having the appropriate name. For example, as of this writing,...

bug (C: surface issue)

Bumps [angular](https://github.com/angular/angular.js) from 1.5.7 to 1.8.3. Changelog Sourced from angular's changelog. 1.8.3 ultimate-farewell (2022-04-07) One final release of AngularJS in order to update package README files on npm. 1.8.2 meteoric-mining...

dependencies

https://github.com/geneontology/noctua-visual-pathway-editor/pull/35

release testing

Hi, It seems inappropriate that the Info Tab provides "info" about reasoning even when reasoner is off. When the reasoner is OFF, the Info Tab appears not to know anything...

Use case description: As an example, a curator has a molecular function node in their model and they want to create a 'causally upstream of' edge between that node and...

enhancement
model linking
GO-CAM annotation
GO-CAM end usability

Although curators generally check their models with the reasoner before they make them production. Once in a while a model slips through. It would be nice to have a QC...

QA/QC