Fernando Puente-Sánchez

Sure, try `download_databases.pl` instead!

Just as an update to this, as this happened to me too last week... This issue happens when using `make_databases.pl` and downloading the nr database from NCBI's site. In my...

It might be normal, depending on how many cores you are using. As long as spades is progressing (even if it does so slowly) I wouldn't worry. You can check...

By any chance are you using miniconda2 instead of miniconda3? https://github.com/mamba-org/mamba/issues/640

`File "/home/btschits/miniconda3/lib/python2.7/site-packages/conda/exceptions.py", line 1079, in __call__` Ok apparently you are using miniconda3 BUT somehow it is using python 2 instead of 3, so I still believe it might be related....

There is a problem with your conda/mamba installation. https://github.com/mamba-org/mamba/issues/512 https://github.com/mamba-org/mamba/issues/947 According to the devs some causes might be mamba being installed in an environment different from the base environment, or...

Hm, the problem with the latest version of miniconda seems weird, but if it happens with all the packages I'll let the conda guys figure it out :P. Glad that...

>Where I provided my 17 metagenomes in "metagenomes" directory instead of raw reads as samples -f metagenomes This is not the intended way to do it. If you have complete...

Please update SqueezeMeta to v1.5.2 (make sure to re-link the new installation to the old database using `configure_nodb.pl`. There we updated DIAMOND to version to 2.0.14, which should get rid...

Closing due to lack of activity, feel free to reopen