Fernando Puente-Sánchez

Is it possible that the SqueezeMeta database resides in a remote filesystem (e.g. a shared storage in a cluster)? If so, it might something like this https://stackoverflow.com/questions/13139309/dbdsqlite-issue-with-i-o-errors-over-mounted-filesystem Not sure if...

Closing due to lack of activity, feel free to reopen

1) Use the latest version of SqueezeMeta, we have some improvements in that regard 2) Allocate enough memory when requesting the job in your cluster 3) Manually set up DIAMOND...

Hi! 1) Running `make_databasesl.pl` will not install SqueezeMeta, just compile a new database from the source data. To have the newest version just install SqueezeMeta again with conda in a...

SQMtools needs to be installed manually. It should happen automatically when you create the conda environent. Otherwise you can clone the repository, git checkout into the tag of the SqueezeMeta...

Closing due to lack of activity, feel free to reopen

You most likely ran out of memory, where are you running this?

Yes, let me know if this helps!

It would seem so. How many reads do you have?

And how many samples do you have?