Fernando Puente-Sánchez

I was double-checking the code and it shouldn't matter anyways... I'm a bit surprised that it is taking so much memory, but try increasing it even more, see if it...

How much memory was that? Were the samples that failed the ones with the most reads?

Just realized this opened issue went under my radar. Feel free to add any update you have on this. I will leave the issue open since this is an area...

Closing due to lack of activity, feel free to reopen

Great, thanks for compiling this! :)

If you are trying to run `SQMtools` (`loadSQM` in particular) in Windows without having run `sqm2tables.py` in your Linux computer, the command will fail complaining about `sqm2tables.py`. If this is...

Hi! It is possible and easy, but there is a caveat. Assuming that you already have an assembly with the contigs you want to analyze, you can just add the...

I made a mistake in the command I recommended above. It would be ` -extassembly your_assembly.fasta --nobins -d`

You can not skip prodigal but it shouldn't affect the abundance estimation step

Everything runs fine with R>4.0.0, but eventually the conda installation started failing because of some bioconda.bioconductor package. I opened the `R4` branch with the necessary changes to the conda recipe,...