Fernando Puente-Sánchez

What happens if you just run ``` OMP_THREAD_LIMIT=128 python3 /mnt/netapp2/Store_uni/home/uvi/ba/mav/conda/envs/SqueezeMeta/SqueezeMeta/bin/CONCOCT-1.1.0/bin/concoct --composition_file /mnt/lustre/scratch/nlsas/home/uvi/ba/mav/vermi_MAGs_binners/temp/vermi_MAGs_binners.choppedcontigs.fasta --coverage_file /mnt/lustre/scratch/nlsas/home/uvi/ba/mav/vermi_MAGs_binners/intermediate/binners/concoct/coverage_table.tsv --threads 128 -m 2500 -b /mnt/lustre/scratch/nlsas/home/uvi/ba/mav/vermi_MAGs_binners/intermediate/binners/concoct/concoct_int/ ``` ?

Not necessarily, this is a different bug that was fixed in v1.6.0. Can you update to v1.6.0 and re-run the project?

> I will try it later because in the server that error does not appear when using loadSQM. By now I have run sqm2tables.py and then loadSQMlite pointing to tables...

Sorry I let this slip. No, you don't need to download them again, just activate the new environment and then run ``` configure_nodb.pl /path/to/db test_install.pl ```

> However, as I could freely subset the SQMobject by fun/tax, theoretically I should be able to derive the functional abundance each SINGLE taxa has for a gene set (or...

The `--restart` option was added in version 1.6 (released last week) so it won't work if you have the previous version. Use `restart.pl -p mergedtest` instead. I'm not sure whether...

Closing due to lack of activity, feel free to reopen

How much available memory do you have? It is hard to predict how much memory will you need for a coassembly, as it will depend on the number of samples,...

This seems to be the same problem as in #500 and #523, in which `make_database.pl` fails due to NCBI servers rejecting/stalling the connection. You can try to download a pre-compiled...

No, it should be faster. Are you writing the databases into a network-mounted drive?