Fidel Ramirez
Fidel Ramirez
I will take a look at this when I have some time.
I really don't have time to dig into this.. sorry. But I noticed that the guys from CoolBox (https://github.com/GangCaoLab/CoolBox) integrated pyGenomeTracks into python notebooks. Maybe they can provide a better...
can you elaborate? Are you trying to do this (from the tutorial you mention): ```PYTHON adata = sc.read_10x_mtx( './data/filtered_gene_bc_matrices/hg19/', # the directory with the `.mtx` file var_names='gene_symbols', # use gene...
Can you elaborate? What do you mean with the output? In the past we only computed up to 100 genes by default but now we do it for all. You...
I could modify dotplot to return this information. Initially, I thought that the data used by dot plot was too *ad hoc* because the percentage (size of dot) is based...
yes, please merge with the master branch
I have noticed the same issue. As a workaround you can do ```python adata.obs['boolean'] = adata.obs['boolean'].astype(str).astype('category') ```
you can make a new column to avoid overwriting the boolean. ```python adata.obs['boolean_cat'] = adata.obs['boolean'].astype(str).astype('category') ```
This sounds great. If I recall correctly it is possible to upload data to the broad single cell portal and share this link with other people right? This would certainly...
@LuckyMD thanks for the suggestion. I actually wrote some code long time ago that does something similar and that I use quite frequently. The main difference is that I always...