Fidel Ramirez comments

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                                            Fidel Ramirez

Interest in HTO/ADT demultiplexing and analysis?

If your implementation already uses scanpy, the best is to keep it in your repository and we can link to it from scanpy (see https://scanpy.readthedocs.io/en/stable/ecosystem.html). I did some work on...

ValueError: The first argument of bincount must be non-negative

Converting the data from HiC pro to HiC explorer may not work properly because of the structure of the data. Can you try producing the data directly with HiCExplorer?

Problem with cooler version

@francicco The new 2to3 branch should solve the issue.

Order of plotting datapoints with categorical colouring should be amended

We should make dynamic 3D plots ;-) If I remember correctly, in the past we have the issue that the categorical colors were given by the adata.obs order and we...

Order of plotting datapoints with categorical colouring should be amended

@ivirshup I like your notebooks for a cookbook. Does it need to be super organized to add it to the readthedocs page? Regarding the options, I like the `sort_order='random'`. The...

Can't swipe in desktop version

Thanks for your answer. The swipe sometimes works, otherwise I just select the text.

Plotting overhaul

I am doing some changes to `sc.pl.dotplot` see #1127 I hope that we are not overlapping.

Plotting overhaul

I will try to incorporate the changes that are not related to scatterplots into #1127

added support for individual cmaps for continous variables

Hi. Thanks for the PR. I would like to know what is the advantage of this as currently, the `cmap` value can be passed to any scatter plot. Can you...

The method for annotating genes with cell types

Any update on this? Can you add a test (probably reusing the example already in the method docstring)?