Fidel Ramirez
Fidel Ramirez
Yeah, please add it together with a comment mentioning where is needed (e.g `external.tl.annotator` )
Indeed something like this would be nice. Do we have an example using `seaborn` ?
Thanks for the reply. I like the idea of having tests based on notebooks! There are many functions not currently tested and that would easily add may more tests. However,...
About the `rank_genes_groups`: I have noticed that the `logreg` method usually does not produce good results (tested with multiple samples). The identification of marker genes is something that I have...
I will fix that real quick.
do you have the latest version of HiCExplorer? The .h5 matrix that you are trying to load does not have some information, namely 'correction_factors` On Sun, Mar 3, 2019 at...
Looks like a corner condition was reached and the code was not prepared to handle it. Path, in this case is a list of id, that define continuity of a...
I had made some progress with a python3 version of hicassembler. The code is in the https://github.com/maxplanck-ie/HiCAssembler/tree/2to3 branch for those who wants to try it. I still see some errors...
For some reason the coordinates of a contig are not correct. How are you calling hicassembler? On Tue, Mar 12, 2019 at 4:25 PM Xin Wang wrote: > Hi >...
To be clear, did you run the misassembly correction before? On Thu, Jan 10, 2019 at 9:42 AM yongyiyu wrote: > Hi Fidel， > I have created a corrected Hi-C...