Fidel Ramirez
Fidel Ramirez
Try with python 2 Fidel Ramírez > On 2 Mar 2019, at 17:50, zhuangfjnu wrote: > > Hi Fidel, > After I installed HiCAssembler, I get this error > $assemble...
you can ignore the Warning. The problem is: ``` ValueError: cannot have a multithreaded and multi process server. ``` I am not familiar with that error, but probably is unrelated...
I agree that yaml is probably a better option compared to the config.ini and I will support migrating to this format. However, we have to probably modify the format because...
We need to remove the 'gene' view altogether and leave only the browser part.
With respect to views.py I don't see much problems but I have not tested them (@bgruening does it run for you?). For the other edits I have to warn you...
Different subdirs will be quite useful for us as well. Something that I think is not working for me in the current version is the search by gene name. Is...
we should make it part of the config.ini file.
Not only violin but most plotting options do not consider what you have in `.var`. I this guarantees consistency in that what you see, for example in a violin plot,...
the problem is related to the palette being used. The color palette is taken from the scatter plots. A way to fix this is by running for example `sc.pl.umap(adata, palette='Blues')`....
@gokceneraslan If I follow you correctly, the idea would be to add a palette argument to heatmap. That indeed may solve the issue and should not be difficult to achieve....