Young

Nancy will be working on this.

@ChiaraCampanelli this tool sounds awesome! Can you share your Dockerfile? We might be able to help.

Your Dockerfile built successfully and your test worked. I was going to copy the results of the tests, but it's [a lot of lines](https://github.com/StaPH-B/docker-builds/actions/runs/4128491212/jobs/7133001778). Github actions failed because your image...

Were you able to get your permissions issues figured out?

I was working on this today, and I actually got this to work (to a point). I tried to run the tutorial, but there's something wrong with a python script...

Thank you! I ran into this problem today and it was nice that it was already fixed.

There's a new version of panaroo! More details here: https://github.com/gtonkinhill/panaroo/releases/tag/v1.5.0 As such, I've updated the files to the most recent version.

I went to check on this PR, and it looks like there are some changes being made to the virulencefinder_db (https://bitbucket.org/genomicepidemiology/virulencefinder_db/commits/). I want to give those some time to settle.

I've updated the database commit hash. It looks like the last commit was at the beginning of April, so this is probably safe to review now.

@kapsakcj , it appears that version 3.0.0 came out the other day. It's similar to resfinder. I've changed the tool specific readme drastically. Let me know if something is unclear.