Young

icon indicating a website link https://uphl.utah.gov/

icon company Utah Public Health Laboratory icon location Salt Lake City, UT icon location Bioinformatician in public health

Results 125 comments of Young

Panaroo vs. Roary

I think bactopia also has a pirate option for pangenome analysis too.

Panaroo vs. Roary

Also, I JUST FOUND THIS PAPER/TOOL (https://github.com/maxgmarin/panqc). This should add some additional QC to panaroo. I'm going to try this tomorrow (or sometime soon).

Move from mast dist to mash screen

It's still on my radar, but I need to finish https://github.com/UPHL-BioNGS/Donut_Falls/pull/9 first.

Move from mast dist to mash screen

Actually, might just be moving to rdp

Add Centrifuge and metaPhlan2

It would be great to have a classifier that's built for nanopore reads (or other long-read sequencing methods) like spumoni. Kraken2 can have issues with nanopore's higher error rates.