cloud-pipeline
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epam
Cloud agnostic genomics analysis, scientific computation and storage platform
**Background** At the moment, pipe CLI's `-s` option uses files' sizes to make a decision if a file shall be pushed to the Cloud. If would be beneficial to include...
**Background** Sometimes, grid engine job are launched with custom requirements which cannot be satisfied. It would be helpful if grid engine autoscaler could purge such job custom requirements. **Approach** Optionally...
**Background** SGE exclusive resource support has been introduced in fa6476cf. Currently, grid engine autoscaler ignores job exclusive resource requirements. **Approach** Grid engine autoscaler should respect SGE exclusive job requirements.
Similarly to download function for S3 buckets, it should be possible to download AWS Omics files: - Specific source or index file of an AWS Omics readSet/reference - The whole...
**Background** Currently, _pipe storage mount_ command allows to mount object storages and WebDAV servers as local directories. In certain scenarios, it may be helpful to also serve local directories as...
Should be done with a new form on AWS Seq Store view: fields: - File type (BAM, CRAM, UBAM, FASTQ) - Reference from ref storage (required for BAM and CRAM),...
**Background** DTS shall support a preference to enable additional logging. If it is enabled, all pipe command stdout and stderr shall be logged to a separate log file.
**Background** Now pipe command for DTS service is set in application.properties file. Allow to configure pipe command along with it parameters using DTS preferences.
**Background** After these changes 43266d771bc302039e05761732d5519450a9d800 we removed force delete for pods which sometimes lead to pod hanging in terminated status for unlimited period. **Approach** PodMonitor shall contain in-memory list of...
AWS Omics store have capability to import files into it from s3 bucket, we also have such functionality on the server side, let's implement it on the UI as well....