cloud-pipeline
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epam
Cloud agnostic genomics analysis, scientific computation and storage platform
This PR fixes bug when `autoscale_sge` could crash while scaling up, when muster is not configured as a worker
**Background** At the moment, Cloud Pipeline allows to tag compute resources in the target cloud provider using global configuration only (defined via `cluster.networks.config`). It would be useful to add some...
Relates #3527. The pull request brings support for profiling to pipe cli via `--profiling` flag. The following environment variables have been added: - `CP_PROFILING` enables profiling in pipe cli. Disabled...
**Background** Currently, pipe has no way to profile its workload. At the same time it may be extremely helpful to troubleshoot performance issues. **Approach** Introduce `--profiling` flag which will enable...
In order to integrate with AWS Omics Store the next changes should be performed: - **Infrastructure** - provisioning of new resources to facilitate AWS Omics - **api-srv** - server side...
Resolves #3488. The pull request brings support for the following commands to pipe cli: - `pipe storage server start` - `pipe storage server stop` - `pipe storage server list`
pipe CLI shall be capable of: * Verify uploaded objects integrity (enabled by default) * Allow to define which algorithm shall be used for the checksum calculation (default: md5, override...
## Prerequisites ### Indices and Shards Elasticsearch index consists of one or many primary shards. Each primary shard is a unique subset of index's documents. Each primary shard may have...
# Background This issue contains backlog of features that currently not implemented. ## AWS Omics objects in Cloud Pipeline - [ ] Billing for AWS Omics storages ## AWS native...