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Cloud agnostic genomics analysis, scientific computation and storage platform

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Relates #3583. Adds support for refreshable API tokens to pipe common. Additionally, it updates grid engine autoscaler and user synchronisation to use the new functionality. ```python from pipeline.api.api import PipelineAPI...

Relates #3583. The pull request brings support for resilient logging to pipe common. In case of logging failure, scripts will crash no more.

Relates #3583. The pull request brings support for the following system parameter: - `CP_SSH_EXTRA_ARGS` specifies additional ssh arguments which will be used by cluster workers during cluster attachment. Defaults to...

### Background Currently, grid engine autoscaling process does not handle the following issues: #### API token expiration Grid engine autoscaler uses the same API token which was used during launch...

kind/enhancement

### Meterics - GPU Utilization - GPU Memory utilization ### Dimension - Time - GPU ID (Model) ### Node stats #### Global metrics: - Time GPU active (%% of node...

kind/enhancement
state/has-doc

**Background** Docker images can be extremely big, so it is nice to have a mechanism to warn/reject user from creation or running such big images. **Approach** 1. Let's introduce 2...

kind/enhancement
state/has-doc

User should be able to easily compose dockerfile based on tool image history. To be able to implement this, lets do the following: ### Server new method GET `/tool/dockerfile` with...

kind/enhancement
state/has-doc

This PR update e2e test for #913