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Got it. The PCA analysis is performed using the scaled data. Can you please try: cellrouter > cellrouter > - > > genes.use = marker_use, > > - > >...

Cool! Keep me posted! Thanks much! Em qua, 15 de ago de 2018 às 09:52, zorrodong escreveu: > That is great, I think it will work. > > Before, I...

Hi, Thank for your interest in our work! I apologize but the current version of CellRouter will not work on a Windows computer because some intermediate steps require .sh scripts....

Hi, No problem. 1. Only top "transcriptional regulators" are shown. The ones with similar size/color are then predicted targets of the "trascriptional regulators". 2. The derivative captures the changes that...

Great! Thanks! Please, let me know if you have further questions or suggestions to improve. Thanks! 2018-05-26 7:27 GMT-04:00 JianmeiZhong : > OK,I see them all.Thanks for your detailed explanation~...

Hi Andrea, Can you please try loading igraph before calling buildGRN: library(igraph) Thanks! On Tue, 22 Feb 2022 at 06:46, Andrea ***@***.***> wrote: > Hi, > > I've been trying...

Great! Thanks for using CellRouter! On Tue, 22 Feb 2022 at 11:20, Andrea ***@***.***> wrote: > That solved the issue, thanks a lot! > > — > Reply to this...

Hi, Thank you for your using our software! The clustering algorithm that cellrouter implements at this point aims at identifying more clusters to allow reconstruction of trajectories between specific locations...

You are exactly right. It is fine to use different values of K for clustering and trajectory identification. For example, clusters identified with k=5 will bethe ones used for trajectory...

Hi, I think you are correct in your observations. It usually require some iterations to identify clusters and signatures that make sense biologically. I am now actively working to improve...