function processtrajectories

[LaptopY]

Hello, Congratulations for your recent work. I was trying to complete your tutorial describing how to apply CellRouter to the mouse bone marrow single-cell RNA-sequencing dataset (Thank you very much for this tutorial, it is highly useful as a new user in R). I was able to obtain the file "CellRouter_StemID.R", but just after this step, I started to have some troubles.

cellrouter <- processtrajectories(cellrouter, genes2use, path.rank=ranks[3],

•                               num.cells = 3, neighs = 1)
  

Error in processtrajectories(cellrouter, genes2use, path.rank = ranks[3], : could not find function "processtrajectories"

Do you have an idea of this problem ? I am working with Windows (English is not my native language, I apologize for that).

Thank you

[edroaldo]

Hi,

Thank for your interest in our work!

I apologize but the current version of CellRouter will not work on a Windows computer because some intermediate steps require .sh scripts. I am trying to figure out a way to make that work on computers with Windows, but it might take me a few weeks to figure that out.

If you have access to a computer with linux or a mac, that would work.

Thanks!

2018-03-29 10:32 GMT-04:00 LaptopY [email protected]:

Hello, Congratulations for your recent work. I was trying to complete your tutorial describing how to apply CellRouter to the mouse bone marrow single-cell RNA-sequencing dataset (Thank you very much for this tutorial, it is highly useful as a new user in R). I was able to obtain the file "CellRouter_StemID.R", but just after this step, I started to have some troubles.

cellrouter <- processtrajectories(cellrouter, genes2use, path.rank=ranks[3],

                             num.cells = 3, neighs = 1)

Error in processtrajectories(cellrouter, genes2use, path.rank = ranks[3], : could not find function "processtrajectories"

Do you have an idea of this problem ? I am working with Windows (English is not my native language, I apologize for that).

Thank you

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-- Edroaldo

[LaptopY]

I understand, Thank you very much for your help.