edroaldo

Awesome! That's great! Just need to be careful changing which metadata column if you want to use (seuratClusters, potentially "celltype" if you further annotate your clusters, things like that). This...

Fantastic! Glad it is working! Let me know if you have other issues or suggestions to further improve CellRouter! Thanks! 2018-07-31 11:04 GMT-04:00 fereshtehizadi : > Exactly the problem as...

You are most welcome! 2018-07-31 11:10 GMT-04:00 fereshtehizadi : > Thanks a lot for your time > > — > You are receiving this because you commented. > Reply to...

I strongly recommend you to create a folder "results" in your working directory and then a folder "paths" inside your folder results, to make the working directory as "clean" as...

Thank you and I am sorry you are facing issues. The error message suggest that a previous command, findpaths, did not produce all outpur required. This could be due to...

Glad to help! The output looks correct. Could you please send me your file Cells_FlowNetwork_scripts.Rout? And also Cells_FlowNetwork_all_paths_subnet.txt? Just want to check a few things. Thanks! 2018-04-23 9:55 GMT-04:00 natlasy...

Everything looks just fine. That's interesting. Would you mind to send me your script, so I can check line by line what your are doing? I think a directory might...

It should not impact the workflow. I tested this with previous R versions at the beginning... Thanks! 2018-04-23 10:16 GMT-04:00 natlasy : > Now I realized: > Warning messages: >...

Everything looks fine. Were you able to reproduce the examples in the website? If you do: filename

This is why you are getting an errors with processtrajectories. I need to know if you created a folder named paths inside your folder results. You should have a list...