edroaldo

This is an issue... On Tue, Apr 24, 2018, 4:45 AM natlasy wrote: > I noticed I am getting the below warning in between, not sue if this is >...

I am sorry you are having troubles but is unusual to see that installation of new packages your R installation. Have you tried to restart R studio? Thanks! On Tue,...

Your problem is happening before that. It is very weird to the cellroutet@directory empty. Is there any error in your findpaths function? Can I see how you are calling the...

The warning msgs are fine. They do not affect anything. I have no idea what it is going on. It does not make any sense the findpaths function finish with...

No problem at all! Glad that it worked and please let me k2ow if you need anything else. Thanks! On Thu, Apr 26, 2018, 5:07 AM natlasy wrote: > Dear...

You need to increase the parameter k in the function buildKNN to have a connected graph. When you use the plotKNN function, do you see connections between your cluster or...

Sorry for my delayed response. Question 1) Yes, you can use something like this: genelist Question 1) > Is there a way to plottrajectory without smoothening? I want to look...

Sorry for my delayed response. I have been hopeful to release some updates in cellrouter but still could not find the time. At the meantime, you can use the function...

Hi, Thanks for trying CellRouter. Regarding 1: I think I did not undestand your first question. The kNN is performed in "cell space" not at the "gene space". In principle,...

Can you please send me the few lines of code up to computePCA such that I can have some context on how you are doing this? If I remember correctly,...