Eric Deutsch

Set up a /healthcheck endpoint that can be monitored

1

Based on today's AHM discussion: It would nice to have something like a /healthcheck endpoint that could report substantial problems and could be monitored. So for example, - When /healthcheck...

SemMedDB Novelty?

12

Should we ponder if/how we might leverage this "Novelty" idea in SemMedDB? https://togithub.com/NCATSTranslator/minihackathons/issues/313 (non-autoreferencing link)

Consider adding Response caching for ARAX and/or KG2

2

consider adding Response caching. 1. the biggest bang for the buck would be for ARAX. Less so for KG2. But KG2 could also benefit some 2. there is already something...

ARAX returning results with predicates that are not supported by Biolink Model 3.1.2

65

I looked into this very briefly so I thought I'd start an issue locally. Related to this: https://github.com/NCATSTranslator/Feedback/issues/118 It seems like there are two possibilities: 1) KG2.8.0 contains "gene_associated_with_condition", which...

Validator is working again and ARAX results are not valid

20

The TRAPI validator is on-line again and showing all the TRAPI problems everyone has. We should address these as soon as we can so the validator is showing green for...

DTD inferred treats with 1 result and no support_graph

6

https://arax.ncats.io/devED/?r=142087 inferred treats query usually return 10 results, but here only 1 is returned and also the treats edge does not have a support_graph? Came in via Feedback: https://github.com/NCATSTranslator/Feedback/issues/302 Ideas...

Should Node Synonymizer have concepts not in KG2?

2

Our Node Synonymizer has historically (and the current version I think is the same?) only included terms that are in RTX-KG2. Since RTX-KG2 does not include the term 'fentanyl overdose':...

Migration to TRAPI 1.4

19

The migration to TRAPI 1.4 is about to begin. The 1.4-beta release is scheduled for tomorrow March 23. Here is the TRAPI 1.4 ChangeLog to get a sense of what's...

Test GUI with analyses and display them somehow

6

Here is an example query from @chunyuma from Slack ``` { "message": {"query_graph": { "nodes": { "disease": { "ids": ["MONDO:0004975"] }, "chemical": { "categories": ["biolink:ChemicalEntity"] } }, "edges": { "t_edge":...

Crash in the logs

1

Hi everyone, here's a crash from the logs when Plover is an in an error state: ``` 2023-03-29T12:32:18.002941 DEBUG: [] Sending query to https://kg2cploverdb.ci.transltr.io 2023-03-29T12:32:18.006977 ERROR: [UncaughtError] An uncaught error...