Eric Deutsch
Eric Deutsch
On various calls, Sierra has been asking to do unbound queries. the use case is that (as a hypthetical example) in our /meta_knowledge_graph we have biolink:Publication - biolink:treats - biolink:Disease...
it seems that the current the test suite is really quite slow. It seems to take an hour to complete even WITHOUT the --runslow option? ``` ============================================== 116 passed, 118...
I was trying to do some testing at /kg2NewFmt and it seemed like the connection to Apache was in limbo. I sent in the query, but the connection was stuck....
While testing the results of Chunyu's fix for #1925 (which seem to be working nicely as designed) I decided to examine the current answer quality and ranking for our example...
I think this also happened before on our own instance, but this morning Sarah reported that ARAX prod was not working. I see queries on there crashing with: ``` 2023-02-06T21:05:43.221269...
Got an alert this morning that ARAX was not working properly. Found two services not running: ``` * /mnt/data/orangeboard/production/RTX/code/UI/OpenAPI/python-flask-server/RTX_OpenAPI_production.start is not running * /mnt/data/orangeboard/kg2beta/RTX/code/UI/OpenAPI/python-flask-server/KG2/RTX_OpenAPI_kg2beta.start is not running ``` The others...
I was asked to write up an implementation plan for exclude=true implementations. At the moment, only ARAX implements this, but there is guarded interest in making this formally part of...
There are open requests/queries if the ARAX GUI can show Qualifiers. Can we do it? Examples here: https://biolink.github.io/biolink-model/guidelines/TRAPI-examples.html and here: https://github.com/NCATSTranslator/ReasonerAPI/tree/master/examples/Message
From Jenn Hadlock: Would it be possible to add new predicates from 2.4.8? Basazin Belhu (Bassa) For instance, my team updated the predicate to "associated_with_increased_likelihood" and associated_with_decreased_likelihood". I could not...
Validation of TRAPI 1.3 Responses is currently failing, e.g.: https://arax.ncats.io/NewFmt/?r=54172 because we are validating TRAPI 1.3 messages against the TRAPI 1.2 schema Because the SRI-maintained TRAPI validator cannot validate against...