Harshil Patel

`CUSTOM_GETCHROMSIZES` will always be run now as added in https://github.com/nf-core/viralrecon/pull/360/commits/f7f99f7b88cf277e92c4b6dc8124eda42ab98899


We neeeeeeddddd this!

Going to stick with what we have as mentioned in my comment above and use `toList()` wherever appropriate. Thanks!

We could also have the ability to provide multiple `--git-remote` options on the CLI and have some sort of fallback mechanism as to where the appropriate components are sourced? Don't...

See [commit](https://github.com/nf-core/rnaseq/pull/978/commits/9f0c3e83bd46eb53625d4c525b113d0194be047a) for how we should replace `System.exit(1)` calls in the pipeline template with `Nextflow.error(message)`. Will need to update the Schema validation script too. At the moment Nextflow still generates...

Hi @jianxinwang ! Thanks for reporting! We are about to release a much updated version of the pipeline that has been completely refactored to be written in Nextflow DSL2. When...

The id (`SRR16299658`) from [this comment](https://github.com/nf-core/fetchngs/issues/116#issuecomment-1435036089) works for me @royfrancis : ``` [02/fce925] process > NFCORE_FETCHNGS:SRA:SRA_IDS_TO_RUNINFO (SRR16299658) [100%] 1 of 1 ✔ [06/fa6ff4] process > NFCORE_FETCHNGS:SRA:SRA_RUNINFO_TO_FTP (1) [100%] 1 of...

Hi @tetedange13 ! Apologies for the late response. I use WSL2 for all of the testing I perform whilst developing this pipeline and it seems to work for me. I...

Hi @ddomman ! Apologies for the late response! Did you manage to run the pipeline with this primer set? If so, be great if you can share the BED file...