Harshil Patel
Harshil Patel
I guess the thought process behind this was that the raw reads come out of the demultiplexing workflow so it would be good to add this as an option here...
Be awesome to have contamination detection built-in here though.
I personally don't use a MAC but would this help? https://github.com/abiosoft/colima You can set `--arch` options.
Closing for now but feel free to re-open if required. See https://github.com/nf-core/rnaseq/issues/1270#issuecomment-2178088070
Just a heads up. The `GRCh38` version of the file above is for the `NCBI` build. Not sure where things are with the `Ensembl` build but if they are the...
We need to bring all of this documentation together in a consistent manner on the website. The plan will be to point users to the website if they ask questions...
Good find @olgabot! This does look really cool :sunglasses:
Should be fixed in the next NF edge release: https://github.com/nextflow-io/nextflow/issues/4081 For now, it may be worth trying NF `23.04.2`.
Hi @lukfor ! This looks great! From what we have seen, the biggest problem typically arises from a few "variable" files that don't allow us to snapshot meaning we have...