Harshil Patel
Harshil Patel
When writing and re-running a bash script or any other type of end-to-end script we can check whether these entities exist dynamically and perform the appropriate downstream steps. e.g. if...
Ok. Thanks. I will test out some solutions like this when messing around with the CLI end-to-end and update here.
Now that the Tower CLI has been added to Bioconda, we just have to stay on top of bumping versions there and we will get Biocontainers for free: https://quay.io/repository/biocontainers/tower-cli?tag=latest&tab=tags x:ref:...
(5) is my favourite! 🎉
Hi @ppericard, I intentionally avoided passing the fragment size to the peak calling because one of the main advantages of MACS2 is that it is able to calculate the shifting...
Yeah, sorry. Its a fine balance between providing a generic set of parameters that can be used to tune the behaviour of the pipeline, maintaining best practice and trying to...
Hi @johannesnicolaus ! Pinging @JoseEspinosa here because he has been responsible for bringing the pipeline to DSL2. Might be easier to have a single parameter that sets non-mandatory options for...
Agree 👍🏽 Default behaviour should be exact matching.
Agree! We now need a `"organizationId"` and `"organizationName"` field in `workflow-metadata.json`
It was to look for contamination in the reads in a quick and unbiased way across organisms.