Harshil Patel

This should be fixed in the next pipeline release by downgrading the version of sratools until it is fixed upstream. See https://github.com/nf-core/fetchngs/pull/261 I will leave this issue open until then...

Hi @lcabus-flomics ! I have tried to use seeds wherever possible to control this behaviour. Can you be more specific as to where you see these differences please and we...

Temporary fix I introduced involved using a `dummy_emit` option in the `emit` statement that can be removed when we have a better solution: https://github.com/nf-core/modules/pull/4774/commits/30ae007e717049ea273590597cb2a6ca3ffa465e

Be interested to see what your implementation looks like @CharlotteAnne ! But adding an independent subworkflow either way as you suggested @MatthiasZepper is a good idea. We can then decide...

Hi @jalilsharif ! Apologies for the delay in responding. These kinds of errors with gzip are a little tricky to troubleshoot. My first suspicion is that the input FastQ file(s)...

Hi @amizeranschi ! We need a much better solution to deal with reference genomes overall. We have been talking about this for a while and ideally, we write a separate...

Thanks @maxulysse ! Are you able to dig a little further to figure out why this is happening please? Link to the pattern in the schema: https://github.com/nf-core/fetchngs/blob/04ee5031a4941b5fc52c158847cf797b45977965/nextflow_schema.json#L20